DNA Sequence Assembler is unique and revolutionary bioinformatics software for

• manual DNA sequence assembly
• automatic DNA sequence assembly
• DNA sequence analysis
• batch file format conversion (SCF, ABI, FASTA, SEQ, TXT, GBK)
• mutation detection

Allows quick DNA sequence inspection:

• Display sample's content as you browse through your folders
• Highlight low quality regions
• Manually or automatically trim low quality ends (batch)
• Convert between miscellaneous formats
• View FASTA, SEQ, TXT, SCF, ABI, AB, AB!, AB1 samples
• View sample properties & statistics
• Display confidence scores

Freeware

Clone Library Dereplicator simplifies the dereplication of all type sequence libraries (16S rRNA, 18S rRNA, 23S rRNA, 28S rRNA, functional and structural proteins) and prepares the raw sequences for subsequent analyses or contig assembly. Clone Library Dereplicator sorts all unique DNA sequences (FASTA) belonging to your clone libraries, by moving/coping them into the specified folder.

Freeware

Cell Counter is a freeware tool that will help you to manually count the cells shown on computer screen by displaying a transparent or semi-transparent grid over your image.

Freeware Cherry patch ranch menu.

An efficient and easy to use FastQ/SFF viewer, editor, filter and converter. NextGen Workbench is the first and the only complete FastQ/SFF editor with graphic interface on the entire bioinformatics market! The program can process huge FastQ/SFF files even when running o a modest computer. Freeware Kingo root for mac.

• Delete samples; cut a file in smaller pieces
• Convert from FastQ/SFF to multiFASTA format
• Sort samples by name, average quality and length
• Displays info: number of samples/reads, average quality of each sample, sample length, mini-chromatograms, clipped ends
• Compact and portable (no installation required)

Size: 2 MB

Avalanche Workbench is a visual data analysis & DNA sequence data mining tool for biologists.

It offers a visual graphic interface through which you can search (eSearch, eLink, eSummary, eFetch) biology databases such as NCBI or get visual access to sequence processing tools/servers.

Freeware

Merge two or more large sequence files (fasta, fsa, fast, fastq, seq, gbk, etc).

Freeware

A tool that automates the NCBI BLAST DB download process. It automatically downloads and unpacks the selected NCBI Blast databases from NCBI ftp server.

Freeware

A tool that allows you to create Blast databases from your own Fasta files.

Freeware

BaserConsole.exe ^
/InputFolder='c:samples' ^
/FileType='*.scf' ^
/OutputFolder='c:samplesout' ^

pause > nul

In situ hybridization of genes and mRNA is most often based on polynucleotide probes.

We recently developed a concept and software (PolyPro) for rational design of polynucleotide probe mixes to identify particular genes in defined taxa. PolyPro consists of three modules: a GenBank Taxonomy Extractor (GTE), a Polynucleotide Probe Designer (PPD) and a Hybridization Parameters Calculator (HPC).

Convertrix is a molecular biology command line tool for converting between several popular DNA sample formats. It can automatically trim the untrusted regions (low quality bases) at the end of samples. The program needs no manual: a graphic interface is available to help you to generate the command line.

Date of release: April 2010

Everything to Fasta Converter converts at batch the samples (SCF, ABI, FASTA, multiFasta, GBK, multiGBK, SEQ, TXT) to FASTA format. Protein FASTA files are also supported.

Freeware

GenBank to FASTA converter is a a freeware molecular biology tool that can convert GenBank (gb/gbk) file format to FASTA format.

Freeware

DNA Nucleotide Counter is a freeware tool that shows the proportions between nucleotides (A, C, G, T, CG, AT) in a DNA sequence. Compact and easy to use.

Freeware